Development of microsatellite markers for <Emphasis Type="Italic">Echinops setifer</Emphasis> (Asteraceae), an endangered grassland plant species in Japan

Echinops setifer is an endangered grassland plant species in Japan. We isolated and characterized nine microsatellite loci in this species. The number of alleles ranged from 3 to 7 and expected heterozygosities from 0.108 to 0.761. These markers described here will be useful for investigating the genetic diversity, genetic structure and gene flow, and planning for conservation of E. setifer.     

Impact of urban fragmentation on the genetic structure of the eastern red-backed salamander

Urban development is a major cause of habitat loss and fragmentation. Few studies, however, have dealt with fragmentation in an urban landscape. In this paper, we examine the genetic structure of isolated populations of the eastern red-backed salamander (Plethodon cinereus) in a metropolitan area. We sampled four populations located on a mountain in the heart of Montréal (Québec, Canada), which presents a mosaic of forested patches isolated by roads, graveyards and buildings. We assessed the genetic structure of these populations using microsatellite loci and compared it to the genetic structure of four populations located in a continuous habitat in southern Québec. Our results indicate that allelic richness and heterozygosity are lower in the urban populations. Exact differentiation tests and pairwise F _ST also show that the populations found in the fragmented habitat are genetically differentiated, whereas populations located in the continuous habitat are genetically homogeneous. These results raise conservation concerns for these populations as well as for rare or threatened species inhabiting urban landscapes.     

Genetic diversity of an endangered plant, <Emphasis Type="Italic">Cypripedium macranthos</Emphasis> var. <Emphasis Type="Italic">rebunense</Emphasis> (Orchidaceae): background genetic research for future conservation

Cypripedium macranthos var. rebunense is an endangered plant endemic to Rebun Island, Japan. A proper understanding of genetic diversity is needed when conducting conservation programs for rare and endangered species. We therefore examined the genetic diversity of C. macranthos var. rebunense using allozyme markers with a view to future conservation. Our study revealed that C. macranthos var. rebunense has relatively high genetic diversity (P was 0.62, n _a and n _e were 1.85 and 1.28 respectively, and H _o and H _e were 0.163 and 0.187, respectively) when compared with other plant taxa. The natural habitats of C. macranthos var. rebunense are geographically separated into northern and the southern populations. Disappearance of alleles and increase in homozygosity expected as a result of the bottleneck effect were observed, particularly in the southern populations composed of a small number of plants. As additional negative effects (inbreeding depression and further genetic drift) due to fragmentation are predicted in these populations, the southern populations may show deterioration of genetic diversity in the near future.     

Assessment of variability among morphological and molecular characters in wild populations of mint [Mentha longifolia (L.) L.] germplasm

Mentha longifolia is an important medicinal and aromatic perennial herb that exhibits wide distribution range from sub-tropical to temperate regions. In the present study, agro-morphological traits and genetic differences in 19 different populations of M. longifolia were studied to evaluate the level and extent of its diversity. Analysis of variance (ANOVA) showed that the different phenotypic characters show considerable differences among various populations and was significant at p < 0.05. Molecular diversity analysis performed by using arbitrary amplified eleven ISSR primers generated a total of 121 amplicons that range within the size of 200–2500 base pairs (bp). Each primer on average generated 11 amplicons with percentage polymorphism being 100. The analysis of molecular variance (AMOVA) showed more (64%) among population genetic diversity and less (36%) within the populations. Greater genetic differentiation (Gst = 0.6852) among these populations occurs due to low gene flow (Nm = 0.2297) and greater habitat variability. Geographic and genetic distances were positively correlated according to Mantel’s test. In order to remove any kind of biases, we used R software to perform cluster and redundancy analysis to analyse the extent of relatedness among studied populations. In terms of morphological and molecular aspects, the populations were grouped into four and five clusters respectively based on hierarchical clustering method. The results demonstrated that M. longifolia displays a great degree of morphological and genetic variation and can be utilized in breeding, genetic improvement, and gene bank conservation programmes in future.     

Coral reef conservation in Bali in light of international best practice,a literature review

Bali, Indonesia sits within the coral triangle and is internationally recognised for its high coral reef diversity. The health of Bali’s marine ecosystems has declined in recent decades, and this is thought to be due to threats from climate change, destructive fishing practices, pollution, outbreaks coral eating invertebrates, coral disease and unsustainable tourism. As a response, multiple conservation strategies have been introduced by the island’s communities, non-government organisations and governments, with the aim of preventing further decline, as well as restoring already degraded coral reefs. This literature review provides an in-depth analysis of the tools used to conserve Bali’s coral reefs, and compares them to those used in other countries. In light of international ‘best practice’ in coral reef conservation, this review makes suggestions on how Bali could better conserve its coral reef ecosystems. These include (1) increasing its designation of official Marine Protected Areas (MPAS) and strengthening management of existing ones, (2) creating an MPA network, (3) substantially reducing marine plastic pollution, (4) continuing artificial reef construction in degraded habitats, (5) continuing to develop Bali as an ecotourism destination, (6) increasing engagement in global science to inform marine conservation decision-making, and (7) developing more marine monitoring programmes.     

Assessing habitat suitability for the translocation of Ochrosia tahitensis (Apocynaceae), a critically endangered endemic plant from the island of Tahiti (South Pacific)

Reintroduction or translocation of threatened plant species, as part of in situ conservation efforts, often failed because of the lack or the poor quality of remaining natural habitats due to human disturbances and invasion by alien species, especially in island ecosystems. We conducted a study on Ochrosia tahitensis (Apocynaceae), a critically endangered endemic small tree in the tropical high volcanic island of Tahiti (French Polynesia, South Pacific) to find the most suitable sites for future translocation. Distribution models were produced based on climate, topography, and plant community inventories (i.e. species composition and abundance, canopy height and openness, basal area of woody species) of the few remnant populations. Results show that this species, comprising 32 reproductive trees within 16 populations known in the wild, remains restricted to a few ecological refuges representing a very small part of its potential ecological range located on the northwest side of the island, and shares its current habitats with a set of more common native woody species found in mesic-wet forests. The use of native plant communities as a proxy for habitat suitability along with species distribution modelling can enhance translocation success in island ecosystems, but only if the major threats causing population decrease, mainly forest destruction and fragmentation and invasive alien species, are effectively managed.     

Current capacity,bottlenecks, and future projections for offsetting habitat loss using Mitigation and Conservation banking in the United States

Habitat banking in its many iterations is an established and popular mechanism to deliver environmental offsets. The United States can look back at over 30 years of banking experience with the underlying framework and policies being consistently updated and improved. Given the increased demand in habitat banking, we provide insights into how bank area capacity is distributed across the United States for four different bank targets (wetlands, streams, multiple ecosystems, species) based on information extracted from the Regulatory In-lieu Fee and Bank Information Tracking System, as well as, estimating future capacities and area reserves through a predictive modeling approach based on data from the past 26 years. Future predictions indicate a decrease in available reserves for banks targeting wetlands or multiple ecosystems, with potential bottlenecks relating to large reserves being limited to the southeast and release schedules not catching up to the current and anticipated demand. Banks targeting species or streams are predicted to meet future demand, with species banks (conservation banks) following a different legislative and operational approach based on the listing of endangered species and pro-active approaches with anticipated future demand. Most current reserves for all four bank types are restricted to very few service areas with around one-third of all bank areas still awaiting release, limiting their availability on a broader scale. Strategic planning networks are necessary to meet future demand on a national scale and to identify areas suitable for banking or likely to experience future environmental or developmental stress.     

The existence value of the Antillean manatee in the unprotected Hondo River (Mexico) as a fundamental component for its conservation

The Hondo River is the natural border between Mexico and Belize, and it is part of the distribution area of the Endangered Antillean manatee Trichechus manatus manatus. Currently, the Hondo River does not have any special protection. Employing qualitative research methods, we documented the social perception and local knowledge from riverside communities to assess conservation status and trends of manatees in the area. Fifty semi-structured interviews were carried out to river users in 16 Mexican communities, distributed in six segments along the riverbed. The claims of the inhabitants agree with boat-based surveys: most of the current and historical manatee sightings were reported in segments of the main watercourses, but also in small tributaries, which are usually shallow and rich in aquatic vegetation. Additionally, the local perception about manatee conservation status can be helpful to understand population trends and threats: 48 % of the interviewees claimed that nowadays the number of sighted manatees is less than that observed 10 years ago. The responders identified water pollution due to cane cultivation practices, motorized vessels traffic, and presence of fishing nets as potential threats to manatees. This study provides evidence of relevant local knowledge about the manatee ecology and its habitat, critical in the construction of binational conservation strategies for the species. Therefore, local resources users may play an increasingly significant role in manatee management and monitoring. Although manatees are poached for their meat in several areas of their distribution, the most common value attributed to manatees in Hondo River was non-use existence values. Local people recognize the challenges to observe this cryptic species in this river, but also identified manatees as potential flag species, suggesting that it may represent a valuable resource for ecotourism. We suggest that the non-extractive use of manatees has the potential for promoting species conservation and local economic growth.     

Genetic resources of Tunisian Artemisia arborescens L. (Asteraceae), pattern of volatile metabolites concentration and bioactivity and implication for conservation

Artemisia arborescens L. (Asteraceae) is an endemic and a valuable medicinal and ornamental species in the Mediterranean regions. Despite the interest given to A. arborescens L. as promising medicinal crop, this species is becoming threatened of extinction in Tunisia as a result of the fragmentation of its habitat and the absence of any specific measures for its conservation and valorisation. Based on the last considerations, extent information about their volatile metabolites profiling, contents and antimicrobial potential were undertaken based on fourteen populations originated from various geographical and bioclimatic habitats of Tunisia. The obtained results reveal an essential oil content mean value of 1.47%. The leaves of Tunisian tree wormwood populations were dominated by camphor (15.05–58.05%), chamazulene (11.72–45.26%) and β-thujone (0–36.53%). Based on the three first major compounds detected for each population, four different oil types were defined (Oil type I: camphor-chamazulene-β-thujone; Oil type II: camphor-chamazulene-terpinen-4-ol; Oil type III: camphor-chamazulene-bornyl acetate; Oil type IV: camphor-chamazulene-linalool). PCA, HCA and Heatmap chemometric analyses revealed three classification clusters defined mainly by minor compounds. These minor volatile metabolites succeed to discriminate among the fourteen studied populations which promote their chemotaxonomic interest. Our findings confirm previous reports concerning this species in the world and show chamazulene, camphor and β-thujone as the major compounds of this species which define their well known chemotypes independently of the geographical, bioclimatic and genotypic factors. This makes of these three components promising chemosystematic tool for the discrimination of A. arborescens L. in the genus Artemisia. The results showed that the four tested oils were effective against the nine tested microbial strains. The highest antimicrobial potential was revealed for the population AAr_MB characterized by camphor, chamazulene and β-thujone as the dominant components. The pattern of essential oils concentration offers wide range of possibilities for the initiation of breeding programs according to the desired bioactive compounds. Both in situ and ex situ conservation strategies were suggested for the maintenance of the highest chemical polymorphism of this valuable medicinal species.     

Soil tillage reduces arthropod biodiversity and has lag effects within organic and conventional crop rotations

Crop rotation systems in organic and conventional farming systems differ in crop types, management and duration. However, changes in arthropod communities over the entire rotation system are poorly understood, as many studies have surveyed only single years or have not covered the entire rotation period. Here, we describe changes in arthropods in two contrasting systems at a split organic‐conventional farm: an 8‐year organically managed rotation with five crops and a 5‐year conventionally managed rotation with three crops. Arthropods were classified into three functional groups, representing epigeal predators, foliar predators/parasitoids and herbivores/pollinators. Epigeal predators were particularly reduced by soil tillage which occurred annually in the conventional rotation, but was intermittent in the organic. Arthropods were most abundant on the conventional rotation, but most taxonomically diverse on the organic. In the conventional system, all functional groups showed a cyclical change in their taxonomic composition that closely matched the crop rotation sequence, whereas in the organic rotation, the cycle was less clear. Whilst the current year's crop type was the major determinant of arthropod community composition, there was a significant “lag effect” for many taxa from the preceding year's crop. Our results suggest that both the amounts of soil tillage (e.g., in no‐till systems) and crop rotation order have major impacts on arthropods in agroecosystems. Rotations with excessive soil tillage are likely to reduce the abundance of some groups of beneficial arthropods, especially epigeal predators.